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Applied and Environmental Microbiology - November 2007, Volume 73, Issue 22
Food Microbiology: Sally A. Harrow, Velmurugu Ravindran, Ruth C. Butler, John W. Marshall, and Gerald W. Tannock Real-Time Quantitative PCR Measurement of Ileal Lactobacillus salivarius Populations from Broiler Chickens To Determine the Influence of Farming Practices [Abstract] [Full Text] [PDF] [Supplemental material]
Jan L. W. Rademaker, Hélène Herbet, Marjo J. C. Starrenburg, Sabri M. Naser, Dirk Gevers, William J. Kelly, Jeroen Hugenholtz, Jean Swings, and Johan E. T. van Hylckama Vlieg Diversity Analysis of Dairy and Nondairy Lactococcus lactis Isolates, Using a Novel Multilocus Sequence Analysis Scheme and (GTG)5 -PCR Fingerprinting [Abstract] [Full Text] [PDF]
Elionora Hantsis-Zacharov and Malka Halpern Culturable Psychrotrophic Bacterial Communities in Raw Milk and Their Proteolytic and Lipolytic Traits [Abstract] [Full Text] [PDF] [Supplemental material]
Jihong Li, Sameera Sayeed, and Bruce A. McClane Prevalence of Enterotoxigenic Clostridium perfringens Isolates in Pittsburgh (Pennsylvania) Area Soils and Home Kitchens [Abstract] [Full Text] [PDF] [Supplemental material]
S. Siragusa, M. De Angelis, R. Di Cagno, C. G. Rizzello, R. Coda, and M. Gobbetti Synthesis of [Abstract] [Full Text] [PDF]
Diane R. Baker, Rodney A. Moxley, Mike B. Steele, Jeffrey T. LeJeune, Jane Christopher-Hennings, Ding-Geng Chen, Philip R. Hardwidge, and David H. Francis Differences in Virulence among Escherichia coli O157:H7 Strains Isolated from Humans during Disease Outbreaks and from Healthy Cattle [Abstract] [Full Text] [PDF]
N. Cook, R. A. B. Nichols, N. Wilkinson, C. A. Paton, K. Barker, and H. V. Smith Development of a Method for Detection of Giardia duodenalis Cysts on Lettuce and for Simultaneous Analysis of Salad Products for the Presence of Giardia Cysts and Cryptosporidium Oocysts [Abstract] [Full Text] [PDF]
Christian D. Frazar and Palmer A. Orlandi Evaluation of Two DNA Template Preparation Methods for Post-Immunomagnetic Separation Detection of Cryptosporidium parvum in Foods and Beverages by PCR [Abstract] [Full Text] [PDF]
Anita C. Wright, Victor Garrido, Georgia Debuex, Melissa Farrell-Evans, Archana A. Mudbidri, and W. Steven Otwell Evaluation of Postharvest-Processed Oysters by Using PCR-Based Most-Probable-Number Enumeration of Vibrio vulnificus Bacteria [Abstract] [Full Text] [PDF]
Enzymology and Protein Engineering: Florence Mingardon, Angélique Chanal, Chantal Tardif, Edward A. Bayer, and Henri-Pierre Fierobe Exploration of New Geometries in Cellulosome-Like Chimeras [Abstract] [Full Text] [PDF] [Supplemental material]
David G. Pritchard, Shengli Dong, Marion C. Kirk, Robert T. Cartee, and John R. Baker LambdaSa1 and LambdaSa2 Prophage Lysins of Streptococcus agalactiae [Abstract] [Full Text] [PDF]
Mirella Di Lorenzo, Aurelio Hidalgo, Rafael Molina, Juan A. Hermoso, Domenico Pirozzi, and Uwe T. Bornscheuer Enhancement of the Stability of a Prolipase from Rhizopus oryzae toward Aldehydes by Saturation Mutagenesis [Abstract] [Full Text] [PDF]
Jae-Seok Ha, Jae Jun Song, Young-Mi Lee, Su-Jin Kim, Jung-Hoon Sohn, Chul-Soo Shin, and Seung-Goo Lee Design and Application of Highly Responsive Fluorescence Resonance Energy Transfer Biosensors for Detection of Sugar in Living Saccharomyces cerevisiae Cells [Abstract] [Full Text] [PDF] [Supplemental material]
Haruhiko Sakuraba, Kazunari Yoneda, Kumiko Yoshihara, Kyoko Satoh, Ryushi Kawakami, Yoshihiro Uto, Hideaki Tsuge, Katsuyuki Takahashi, Hitoshi Hori, and Toshihisa Ohshima Sequential Aldol Condensation Catalyzed by Hyperthermophilic 2-Deoxy-D-Ribose-5-Phosphate Aldolase [Abstract] [Full Text] [PDF] [Supplemental material]
Microbial Ecology: Jana Grote, Matthias Labrenz, Birgit Pfeiffer, Günter Jost, and Klaus Jürgens Quantitative Distributions of Epsilonproteobacteria and a Sulfurimonas Subgroup in Pelagic Redoxclines of the Central Baltic Sea [Abstract] [Full Text] [PDF] [Supplemental material]
Ryan J. Newton, Stuart E. Jones, Matthew R. Helmus, and Katherine D. McMahon Phylogenetic Ecology of the Freshwater Actinobacteria acI Lineage [Abstract] [Full Text] [PDF] [Supplemental material]
Hisashi Satoh, Yuki Miura, Ikuo Tsushima, and Satoshi Okabe Layered Structure of Bacterial and Archaeal Communities and Their In Situ Activities in Anaerobic Granules [Abstract] [Full Text] [PDF] [Supplemental material]
Ana L. Flores-Mireles, Stephen C. Winans, and Gina Holguin Molecular Characterization of Diazotrophic and Denitrifying Bacteria Associated with Mangrove Roots [Abstract] [Full Text] [PDF]
Newton C. Marcial Gomes, Ludmila R. Borges, Rodolfo Paranhos, Fernando N. Pinto, Ellen Krögerrecklenfort, Leda C. S. Mendonça-Hagler, and Kornelia Smalla Diversity of ndo Genes in Mangrove Sediments Exposed to Different Sources of Polycyclic Aromatic Hydrocarbon Pollution [Abstract] [Full Text] [PDF]
Shakil Ahmed, George T. Macfarlane, Alemu Fite, Andrew J. McBain, Peter Gilbert, and Sandra Macfarlane Mucosa-Associated Bacterial Diversity in Relation to Human Terminal Ileum and Colonic Biopsy Samples [Abstract] [Full Text] [PDF]
Public Health Microbiology: Somjai Kamolsiripichaiporn, Supatsak Subharat, Romphruke Udon, Panithan Thongtha, and Suphachai Nuanualsuwan Thermal Inactivation of Foot-and-Mouth Disease Viruses in Suspension [Abstract] [Full Text] [PDF]
S. J. Connelly, E. A. Wolyniak, K. L. Dieter, C. E. Williamson, and K. L. Jellison Impact of Zooplankton Grazing on the Excystation, Viability, and Infectivity of the Protozoan Pathogens Cryptosporidium parvum and Giardia lamblia [Abstract] [Full Text] [PDF]
F. P. Sweeney, O. Courtenay, V. Hibberd, R. G. Hewinson, L. A. Reilly, W. H. Gaze, and E. M. H. Wellington Environmental Monitoring of Mycobacterium bovis in Badger Feces and Badger Sett Soil by Real-Time PCR, as Confirmed by Immunofluorescence, Immunocapture, and Cultivation [Abstract] [Full Text] [PDF]
Mycology: Nicole Lorenz, Ella V. Wilson, Caroline Machado, Christopher L. Schardl, and Paul Tudzynski Comparison of Ergot Alkaloid Biosynthesis Gene Clusters in Claviceps Species Indicates Loss of Late Pathway Steps in Evolution of C. fusiformis [Abstract] [Full Text] [PDF]
Michael L. Nielsen, Willem A. de Jongh, Susan L. Meijer, Jens Nielsen, and Uffe H. Mortensen Transient Marker System for Iterative Gene Targeting of a Prototrophic Fungus [Abstract] [Full Text] [PDF]
Ludmila V. Roze, Randolph M. Beaudry, Anna E. Arthur, Ana M. Calvo, and John E. Linz Aspergillus Volatiles Regulate Aflatoxin Synthesis and Asexual Sporulation in Aspergillus parasiticus [Abstract] [Full Text] [PDF]
Physiology and Biotechnology: Lawrence P. Wackett, Janice A. Frias, Jennifer L. Seffernick, David J. Sukovich, and Stephan M. Cameron Genomic and Biochemical Studies Demonstrating the Absence of an Alkane-Producing Phenotype in Vibrio furnissii M1 [Abstract] [Full Text] [PDF]
Effendi Leonard and Mattheos A. G. Koffas Engineering of Artificial Plant Cytochrome P450 Enzymes for Synthesis of Isoflavones by Escherichia coli [Abstract] [Full Text] [PDF]
Olena I. Rzhepishevska, Jorge Valdés, Liucija Marcinkeviciene, Camelia Algora Gallardo, Rolandas Meskys, Violaine Bonnefoy, David S. Holmes, and Mark Dopson Regulation of a Novel Acidithiobacillus caldus Gene Cluster Involved in Metabolism of Reduced Inorganic Sulfur Compounds [Abstract] [Full Text] [PDF]
Sharik R. Khan, Jake Herman, Jessica Krank, Natalie J. Serkova, Mair E. A. Churchill, Hiroaki Suga, and Stephen K. Farrand N -(3-Hydroxyhexanoyl)-L-Homoserine Lactone Is the Biologically Relevant Quormone That Regulates the phz Operon of Pseudomonas chlororaphis Strain 30-84 [Abstract] [Full Text] [PDF]
Weili Liang, Anisia J. Silva, and Jorge A. Benitez The Cyclic AMP Receptor Protein Modulates Colonial Morphology in Vibrio cholerae [Abstract] [Full Text] [PDF]
Evolutionary and Genomic Microbiology: Emilie Dordet-Frisoni, Géraud Dorchies, Cécilia De Araujo, Régine Talon, and Sabine Leroy Genomic Diversity in Staphylococcus xylosus [Abstract] [Full Text] [PDF]
Trine B. Rounge, Thomas Rohrlack, Ave Tooming-Klunderud, Tom Kristensen, and Kjetill S. Jakobsen Comparison of Cyanopeptolin Genes in Planktothrix , Microcystis , and Anabaena Strains: Evidence for Independent Evolution within Each Genus [Abstract] [Full Text] [PDF] [Supplemental material]
M. P. Dempsey, M. Dobson, C. Zhang, M. Zhang, C. Lion, C. B. Gutiérrez-Martín, P. C. Iwen, P. D. Fey, M. E. Olson, D. Niemeyer, S. Francesconi, R. Crawford, M. Stanley, J. Rhodes, D. M. Wagner, A. J. Vogler, D. Birdsell, P. Keim, A. Johansson, S. H. Hinrichs, and A. K. Benson Genomic Deletion Marking an Emerging Subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula [Abstract] [Full Text] [PDF] [Supplemental material]
Plant Microbiology: Belén Álvarez, María M. López, and Elena G. Biosca Influence of Native Microbiota on Survival of Ralstonia solanacearum Phylotype II in River Water Microcosms [Abstract] [Full Text] [PDF]
M. Caroline Roper, L. Carl Greve, John M. Labavitch, and Bruce C. Kirkpatrick Detection and Visualization of an Exopolysaccharide Produced by Xylella fastidiosa In Vitro and In Planta [Abstract] [Full Text] [PDF]
Rodrigo Mendes, Aline A. Pizzirani-Kleiner, Welington L. Araujo, and Jos M. Raaijmakers Diversity of Cultivated Endophytic Bacteria from Sugarcane: Genetic and Biochemical Characterization of Burkholderia cepacia Complex Isolates [Abstract] [Full Text] [PDF]
Genetics and Molecular Biology: Yi-Huang Hsueh, Eileen B. Somers, Didier Lereclus, Emilia Ghelardi, and Amy C. Lee Wong Biosurfactant Production and Surface Translocation Are Regulated by PlcR in Bacillus cereus ATCC 14579 under Low-Nutrient Conditions [Abstract] [Full Text] [PDF] [Supplemental material]
Krassimira R. Hristova, Radomir Schmidt, Anu Y. Chakicherla, Tina C. Legler, Janice Wu, Patrick S. Chain, Kate M. Scow, and Staci R. Kane Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert -Butyl Ether and Ethanol [Abstract] [Full Text] [PDF] [Supplemental material]
Louis-Charles Fortier and Sylvain Moineau Morphological and Genetic Diversity of Temperate Phages in Clostridium difficile [Abstract] [Full Text] [PDF]
Aina Nedal, Håvard Sletta, Trygve Brautaset, Sven E. F. Borgos, Olga N. Sekurova, Trond E. Ellingsen, and Sergey B. Zotchev Analysis of the Mycosamine Biosynthesis and Attachment Genes in the Nystatin Biosynthetic Gene Cluster of Streptomyces noursei ATCC 11455 [Abstract] [Full Text] [PDF]
Monika Komon-Zelazowska, John Bissett, Doustmorad Zafari, Lóránt Hatvani, László Manczinger, Sheri Woo, Matteo Lorito, László Kredics, Christian P. Kubicek, and Irina S. Druzhinina Genetically Closely Related but Phenotypically Divergent Trichoderma Species Cause Green Mold Disease in Oyster Mushroom Farms Worldwide [Abstract] [Full Text] [PDF] [Supplemental material]
Methods: Erika du Plessis, Jacques Theron, Eldie Berger, and Maureen Louw Evaluation of the Staphylococcus aureus Class C Nonspecific Acid Phosphatase (SapS) as a Reporter for Gene Expression and Protein Secretion in Gram-Negative and Gram-Positive Bacteria [Abstract] [Full Text] [PDF]
Julie C. Scott, Mark S. Koylass, Michael R. Stubberfield, and Adrian M. Whatmore Multiplex Assay Based on Single-Nucleotide Polymorphisms for Rapid Identification of Brucella Isolates at the Species Level [Abstract] [Full Text] [PDF]
Keya Sen, Nancy A. Schable, and Dennis J. Lye Development of an Internal Control for Evaluation and Standardization of a Quantitative PCR Assay for Detection of Helicobacter pylori in Drinking Water [Abstract] [Full Text] [PDF]
Khaled K. Mahmoud, Damian McNeely, Chelsea Elwood, and Susan F. Koval Design and Performance of a 16S rRNA-Targeted Oligonucleotide Probe for Detection of Members of the Genus Bdellovibrio by Fluorescence In Situ Hybridization [Abstract] [Full Text] [PDF]
Biodegradation: A. W. Porter and A. G. Hay Identification of opdA , a Gene Involved in Biodegradation of the Endocrine Disrupter Octylphenol [Abstract] [Full Text] [PDF]
Environmental Microbiology: T. Juhna, D. Birzniece, S. Larsson, D. Zulenkovs, A. Sharipo, N. F. Azevedo, F. Ménard-Szczebara, S. Castagnet, C. Féliers, and C. W. Keevil Detection of Escherichia coli in Biofilms from Pipe Samples and Coupons in Drinking Water Distribution Networks [Abstract] [Full Text] [PDF]
Narjol González-Escalona, Brooke Whitney, Lee-Ann Jaykus, and Angelo DePaola Comparison of Direct Genome Restriction Enzyme Analysis and Pulsed-Field Gel Electrophoresis for Typing of Vibrio vulnificus and Their Correspondence with Multilocus Sequence Typing Data [Abstract] [Full Text] [PDF]
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